| Eigenchampion | EigPts | Most points1 | Pts | T | M | G | |
| 2007-08 | Rot Weiss Ahlen | 9.983 | = | 67 | 19 | 342 | d |
| 2006-07 | FC St. Pauli | 8.905 | = | 63 | 19 | 342 | d |
| 2005-06 | Rot-Weiss Essen | 12.575 | = | 76 | 19 | 342 | d |
| 2004-05 | VfL Osnabrück | 11.185 | Eintracht Braunschweig | 70 | 19 | 342 | d |
| 2003-04 | Rot-Weiss Essen | 14.015 | = | 74 | 18 | 306 | d |
| 2002-03 | VfL Osnabrück | 11.686 | Erzgebirge Aue | 66 | 18 | 306 | d |
| 2001-02 | Rot-Weiss Essen | 11.203 | VfB Lübeck | 65 | 18 | 306 | d |
| 2000-01 | 1. FC Union Berlin | 13.81 | = | 73 | 19 | 342 | d |
| 1999-00 | VfL Osnabrück | 14.151 | = | 74 | 18 | 306 | d |
| 1998-99 | VfL Osnabrück | 15.424 | = | 75 | 18 | 306 | d |
| 1997-98 | Hannover 96 | 35.904 | = | 89 | 18 | 306 | d |
| 1996-97 | Hannover 96 | 20.941 | = | 83 | 18 | 306 | d |
| 1995-96 | VfB Oldenburg | 11.277 | = | 67 | 18 | 306 | d |
| 1994-95 | VfB Lübeck | 12.075 | = | 68 | 18 | 306 | d |
1Listed where different from eigenchampion. T = Teams, M = Matches.
G = Graphs: d - Double dominance.
